Oro, Violeta

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MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP

Oro, Violeta; Stanisavljević, Rade; Tabaković, Marijenka; Đokić, Dragoslav

(Nacionalno društvo za procesnu tehniku i energetiku u poljoprivredi, Novi Sad, 2023)

TY  - CONF
AU  - Oro, Violeta
AU  - Stanisavljević, Rade
AU  - Tabaković, Marijenka
AU  - Đokić, Dragoslav
PY  - 2023
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1264
AB  - Potato (Solanum tuberosum L.) is one of four major food crops in the world beside wheat, maize and rice. The plant originated in the highlands of Peru particularly the region around Lake Titicaca and it was first domesticated at least 7 000 years ago. The food security provided by potato and maize allowed the development and survival of civilizations such as, Huari and Inca for centuries. In the 16th century the Spanish conquistadores searching for the "treasure of the Andes" brought to Europe, beside gold, potato along with its parasites – the potato cyst nematodes (PCN): Globodera rostochiensis (Wollenweber) Behrens and G. pallida (Stone) Behrens, two nematode species that have quarantine status. The morphology of potato cyst nematodes was until recently almost the only way to identify these quarantine organisms. In the last two decades, molecular analyses as new trends in modern agriculture, contributed to faster and more efficient identification of these species and allowed insight into the genetic structure of those parts that were practically inaccessible by morphological studies. The nematodes are present in all European potato growing regions, especially in the Balkan (Helm) peninsula, either PCN or both are reported.
The collected specimens of cysts were found in soil originating from a seed potato crop in a village near Gornji Milanovac after the official phytosanitary control in 2022. Individual cysts were used for DNA extraction with a Dneasy blood & tissue kit. The PCR was done with primers for direct sequencing: TW81 and AB28. The ITS1-5.8S-ITS2 region of PCN is used for confirmation of species identity together with its morphological characterization. According to EPPO Standards, the morphological identification comprised larval and cyst characteristics, namely larval stylet length and stylet knob shape, cyst vulval basin diameter, distance between vulva and anus, Granek´s ratio, and number of cuticular ridges in perineal area.
Results confirmed the species identity. The morphology of our population of G. rostochiensis was similar to the previously reported domestic and foreign populations. The degree of similarity was expressed as a percentage of direct matching i.e. pairwise distances. Phylogenetic analyses indicated a possible ancestor of our PCN population showing evolutionary relationships among world populations of G. rostochiensis and a phylogenetic placement of the Serbian population.
PB  - Nacionalno društvo za procesnu tehniku i energetiku u poljoprivredi, Novi Sad
PB  - Poljoprivredni fakultet, Novi Sad
C3  - VIII INTERNATIONAL CONFERENCE SUSTAINABLE POSTHARVEST AND FOOD TECHNOLOGIES - INOPTEP 2023 XXXV SCIENTIFIC - PROFESSIONAL CONFERENCE PROCESSING AND ENERGY IN AGRICULTURE - PTEP 2023 Subotica – Palić, hotel Elitte Palić, 23 – 28. april 2023.
T1  - MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP
SP  - 111
ER  - 
@conference{
author = "Oro, Violeta and Stanisavljević, Rade and Tabaković, Marijenka and Đokić, Dragoslav",
year = "2023",
abstract = "Potato (Solanum tuberosum L.) is one of four major food crops in the world beside wheat, maize and rice. The plant originated in the highlands of Peru particularly the region around Lake Titicaca and it was first domesticated at least 7 000 years ago. The food security provided by potato and maize allowed the development and survival of civilizations such as, Huari and Inca for centuries. In the 16th century the Spanish conquistadores searching for the "treasure of the Andes" brought to Europe, beside gold, potato along with its parasites – the potato cyst nematodes (PCN): Globodera rostochiensis (Wollenweber) Behrens and G. pallida (Stone) Behrens, two nematode species that have quarantine status. The morphology of potato cyst nematodes was until recently almost the only way to identify these quarantine organisms. In the last two decades, molecular analyses as new trends in modern agriculture, contributed to faster and more efficient identification of these species and allowed insight into the genetic structure of those parts that were practically inaccessible by morphological studies. The nematodes are present in all European potato growing regions, especially in the Balkan (Helm) peninsula, either PCN or both are reported.
The collected specimens of cysts were found in soil originating from a seed potato crop in a village near Gornji Milanovac after the official phytosanitary control in 2022. Individual cysts were used for DNA extraction with a Dneasy blood & tissue kit. The PCR was done with primers for direct sequencing: TW81 and AB28. The ITS1-5.8S-ITS2 region of PCN is used for confirmation of species identity together with its morphological characterization. According to EPPO Standards, the morphological identification comprised larval and cyst characteristics, namely larval stylet length and stylet knob shape, cyst vulval basin diameter, distance between vulva and anus, Granek´s ratio, and number of cuticular ridges in perineal area.
Results confirmed the species identity. The morphology of our population of G. rostochiensis was similar to the previously reported domestic and foreign populations. The degree of similarity was expressed as a percentage of direct matching i.e. pairwise distances. Phylogenetic analyses indicated a possible ancestor of our PCN population showing evolutionary relationships among world populations of G. rostochiensis and a phylogenetic placement of the Serbian population.",
publisher = "Nacionalno društvo za procesnu tehniku i energetiku u poljoprivredi, Novi Sad, Poljoprivredni fakultet, Novi Sad",
journal = "VIII INTERNATIONAL CONFERENCE SUSTAINABLE POSTHARVEST AND FOOD TECHNOLOGIES - INOPTEP 2023 XXXV SCIENTIFIC - PROFESSIONAL CONFERENCE PROCESSING AND ENERGY IN AGRICULTURE - PTEP 2023 Subotica – Palić, hotel Elitte Palić, 23 – 28. april 2023.",
title = "MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP",
pages = "111"
}
Oro, V., Stanisavljević, R., Tabaković, M.,& Đokić, D.. (2023). MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP. in VIII INTERNATIONAL CONFERENCE SUSTAINABLE POSTHARVEST AND FOOD TECHNOLOGIES - INOPTEP 2023 XXXV SCIENTIFIC - PROFESSIONAL CONFERENCE PROCESSING AND ENERGY IN AGRICULTURE - PTEP 2023 Subotica – Palić, hotel Elitte Palić, 23 – 28. april 2023.
Nacionalno društvo za procesnu tehniku i energetiku u poljoprivredi, Novi Sad., 111.
Oro V, Stanisavljević R, Tabaković M, Đokić D. MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP. in VIII INTERNATIONAL CONFERENCE SUSTAINABLE POSTHARVEST AND FOOD TECHNOLOGIES - INOPTEP 2023 XXXV SCIENTIFIC - PROFESSIONAL CONFERENCE PROCESSING AND ENERGY IN AGRICULTURE - PTEP 2023 Subotica – Palić, hotel Elitte Palić, 23 – 28. april 2023.. 2023;:111..
Oro, Violeta, Stanisavljević, Rade, Tabaković, Marijenka, Đokić, Dragoslav, "MOLECULAR AND MORPHOLOGICAL DETECTION OF GLOBODERA ROSTOCHIENSIS (NEMATODA: HETERODERIDAE) IN A SEED POTATO CROP" in VIII INTERNATIONAL CONFERENCE SUSTAINABLE POSTHARVEST AND FOOD TECHNOLOGIES - INOPTEP 2023 XXXV SCIENTIFIC - PROFESSIONAL CONFERENCE PROCESSING AND ENERGY IN AGRICULTURE - PTEP 2023 Subotica – Palić, hotel Elitte Palić, 23 – 28. april 2023. (2023):111.

MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS)

Oro, Violeta; Tabaković, Marijenka

(Društvo za zaštitu bilja, 2021)

TY  - CONF
AU  - Oro, Violeta
AU  - Tabaković, Marijenka
PY  - 2021
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1262
AB  - Vrste roda Pratylenchus se po štetnosti nalaze na trećem mestu, posle korenovih i
cistolikih nematoda a spadaju u grupu polifagnih vrsta. Kao migratorni endoparaziti, pored
korena napadaju i ostale podzemne organe (lukovice, gomolje i sl.) pri čemu, napadnuti delovi
odumiru u vidu tamnih, nekrotičnih površina ili lezija pa se zovu i nematode korenovih lezija
(root lesion nematodes). Pratylenchus neglectus (Rensch, 1924) Filipjev and Schuurmans
Stekhoven, 1941 u visokoj brojnosti može da nanese značajne štete, i do 70% ako je udružen
sa drugim patogenima. Prvi nalaz P. neglectus u Srbiji datira s kraja 60-tih godina prošlog
veka. Danas posle 50 godina, izazov je bio da se okarakteriše molekularni profil D2/D3
segmenta 28S ribozomskog RNK gena nematode i da se pronađe filogenetsko mesto domaće
populacije ove vrste među sličnim svetskim populacijama.
Uzorci zemljišta sa parcela Instituta za kukuruz “Zemun polje” u Zemunu na kojima je
združeni usev facelije i heljde su ispitivani u Laboratoriji za nematologiju, Instituta za zaštitu
bilja i životnu sredinu iz Beograda. Nematode su ekstrahovane pomoću Baermanovih levaka.
Genomska DNK je ekstrahovana iz pojedinačnih jedinki nematoda i 28S region je amplifikovan
sa D2A i D3B prajmerima i sekvenciran. Filogenetski testovi su urađeni sa Mega 4 i MrBayes
kompjuterskim programima.
Dobijena sekvenca je poređena sa dostupnim podacima iz Nacionalnog centra za
biotehnološke informacije (NCBI, SAD) i utvrđeno je da od 704 molekularna karaktera, 21 su
varijabilni a 683 konzervativni karakteri. Sadržaj nukleotida je kod svih populacija bio sličan,
s’tim što je procenat guanina i citozina bio veći u odnosu na adenin i timin. U filogenetskom
smislu najsličnije populacije našoj populaciji su populacije iz Češke i Kine.
PB  - Društvo za zaštitu bilja
C3  - XVI SAVETOVANJE O ZAŠTITI BILJA, Zlatibor . 22-25 februar 2021
T1  - MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS)
SP  - 39
ER  - 
@conference{
author = "Oro, Violeta and Tabaković, Marijenka",
year = "2021",
abstract = "Vrste roda Pratylenchus se po štetnosti nalaze na trećem mestu, posle korenovih i
cistolikih nematoda a spadaju u grupu polifagnih vrsta. Kao migratorni endoparaziti, pored
korena napadaju i ostale podzemne organe (lukovice, gomolje i sl.) pri čemu, napadnuti delovi
odumiru u vidu tamnih, nekrotičnih površina ili lezija pa se zovu i nematode korenovih lezija
(root lesion nematodes). Pratylenchus neglectus (Rensch, 1924) Filipjev and Schuurmans
Stekhoven, 1941 u visokoj brojnosti može da nanese značajne štete, i do 70% ako je udružen
sa drugim patogenima. Prvi nalaz P. neglectus u Srbiji datira s kraja 60-tih godina prošlog
veka. Danas posle 50 godina, izazov je bio da se okarakteriše molekularni profil D2/D3
segmenta 28S ribozomskog RNK gena nematode i da se pronađe filogenetsko mesto domaće
populacije ove vrste među sličnim svetskim populacijama.
Uzorci zemljišta sa parcela Instituta za kukuruz “Zemun polje” u Zemunu na kojima je
združeni usev facelije i heljde su ispitivani u Laboratoriji za nematologiju, Instituta za zaštitu
bilja i životnu sredinu iz Beograda. Nematode su ekstrahovane pomoću Baermanovih levaka.
Genomska DNK je ekstrahovana iz pojedinačnih jedinki nematoda i 28S region je amplifikovan
sa D2A i D3B prajmerima i sekvenciran. Filogenetski testovi su urađeni sa Mega 4 i MrBayes
kompjuterskim programima.
Dobijena sekvenca je poređena sa dostupnim podacima iz Nacionalnog centra za
biotehnološke informacije (NCBI, SAD) i utvrđeno je da od 704 molekularna karaktera, 21 su
varijabilni a 683 konzervativni karakteri. Sadržaj nukleotida je kod svih populacija bio sličan,
s’tim što je procenat guanina i citozina bio veći u odnosu na adenin i timin. U filogenetskom
smislu najsličnije populacije našoj populaciji su populacije iz Češke i Kine.",
publisher = "Društvo za zaštitu bilja",
journal = "XVI SAVETOVANJE O ZAŠTITI BILJA, Zlatibor . 22-25 februar 2021",
title = "MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS)",
pages = "39"
}
Oro, V.,& Tabaković, M.. (2021). MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS). in XVI SAVETOVANJE O ZAŠTITI BILJA, Zlatibor . 22-25 februar 2021
Društvo za zaštitu bilja., 39.
Oro V, Tabaković M. MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS). in XVI SAVETOVANJE O ZAŠTITI BILJA, Zlatibor . 22-25 februar 2021. 2021;:39..
Oro, Violeta, Tabaković, Marijenka, "MOLEKULARNA ISTRAŽIVANJA NEMATODE PEGAVOSTI KORENA (PRATYLENCHUS NEGLECTUS)" in XVI SAVETOVANJE O ZAŠTITI BILJA, Zlatibor . 22-25 februar 2021 (2021):39.