Kuzmanović, Nemanja

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  • Kuzmanović, Nemanja (9)
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Author's Bibliography

Сорта Пловдина – нова индикатор биљка за детекцију фитоплазми винове лозе

Kuzmanović, Slobodan; Starović, Mira; Ristić, Danijela; Vučurović, Ana; Kuzmanović, Nemanja; Trkulja, Nenad; Aleksić, Goran

(Институт за заштиту биља и животну средину, 2024)


                                            

                                            
Kuzmanović, S., Starović, M., Ristić, D., Vučurović, A., Kuzmanović, N., Trkulja, N.,& Aleksić, G.. (2024). Сорта Пловдина – нова индикатор биљка за детекцију фитоплазми винове лозе. in Институт за заштиту биља и животну средину
Институт за заштиту биља и животну средину..
Kuzmanović S, Starović M, Ristić D, Vučurović A, Kuzmanović N, Trkulja N, Aleksić G. Сорта Пловдина – нова индикатор биљка за детекцију фитоплазми винове лозе. in Институт за заштиту биља и животну средину. 2024;..
Kuzmanović, Slobodan, Starović, Mira, Ristić, Danijela, Vučurović, Ana, Kuzmanović, Nemanja, Trkulja, Nenad, Aleksić, Goran, "Сорта Пловдина – нова индикатор биљка за детекцију фитоплазми винове лозе" in Институт за заштиту биља и животну средину (2024).

Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji

Zlatković, Nevena; Kuzmanović, Nemanja; Kuzmanović, Slobodan; Gašić, Katarina

(Društvo za zaštitu bilja Srbije, 2023)

TY  - CONF
AU  - Zlatković, Nevena
AU  - Kuzmanović, Nemanja
AU  - Kuzmanović, Slobodan
AU  - Gašić, Katarina
PY  - 2023
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1213
AB  - Proizvodnja koštičavog voća zauzima značajno mesto u voćarstvu Srbije.
Tradicionalno, najviše se gaji šljiva sa sve raznovrsnijim sortimentom u poslednjih desetak
godina, dok je proizvodnja trešnje, višnje i kajsije sve više zastupljena u pojedinim regionima
zemlje, nekoliko decenija unazad. Prema podacima FAO za 2021. godinu, prinos šljive bio je
oko 40.000 t, a trešanja i višanja oko 15.000 t. Iste godine, proizvedeno je oko 30.000 t kajsije.
Uspešnu proizvodnju često ometa pojava različitih biljnih bolesti.
Od bakterioznih oboljenja, bakteriozni rak korena i korenovog različitih gajenih vrsta
zauzima značajno mesto. S obzirom da je utvđeno da bakteriozne tumore osim tumorogenih,
naseljavaju i druge vrste bakterija, deo istraživanja posvećen je izučavanju sastava populacije
mikroorganizama tumora.
Tokom 2020. i 2021. godine na području Srbije, prikupljeni su uzorci šljive, trešnje,
višnje i kajsije sa izraženim simptomima bakterioznog raka. Primenom savremene metode
sekvenciranja umnoženih produkata regiona V3-V4 16S rRNK gena, dobijene su amplikonske sekvence (ASV), koje su dalje obrađene. Na taj način, determinisane su najzastupljenije vrste
bakterija u testiranim uzorcima.
Patogena vrsta R. tumorigenes detektovana je kod trećine od ukupnog broja testiranih
uzoraka. U uzorcima u kojima je prisutna, njena relativna zastupljenost iznosi do ~ 4%.
Rhizobium spp. prisutan je do ~ 11% u uzorcima šljive, odnosno ~ 6% u uzorcima kajsije i ~
5% trešnje i višnje. Vrste roda Bacillus detektovane su u svim testiranim tumorima, sa udelom
i do ~ 53% kod uzoraka šljive. U tumorima na trešnji i višnji, prisutne su vrste roda Rachnella
u koncentraciji do ~ 23%, kao i Cutibacterium do ~ 14%. Vrste roda Pseuodmonas
detektovane su u uzrocima tumora na kajsiji (do ~4%). Osim navedenih, u uzorcima su
prisutni i drugi taksoni u nižim koncentracijama.
Predstavljeni rezultati su deo projekta koji se sprovodi u cilju boljeg razumevanja
odnosa između patogenih i nepatogenih vrsta u zajednici mikroorganizama tumora. Imajući u
vidu sve veći značaj pojave bakterioznog raka u različitim zasadima širom sveta, kao i
potencjalni benefit mikroorganizama koji naseljavaju tumore u biološkoj kontroli i opštem
stanju biljke domaćina, istraživanja na ovu temu će biti od značaja i u narednom periodu.
PB  - Društvo za zaštitu bilja Srbije
C3  - XVII Simpozijum o zaštiti bilja, Zbornik rezimea radova, Zlatibor, 27-30. novembar 2023
T1  - Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji
EP  - 55
SP  - 54
ER  - 
@conference{
author = "Zlatković, Nevena and Kuzmanović, Nemanja and Kuzmanović, Slobodan and Gašić, Katarina",
year = "2023",
abstract = "Proizvodnja koštičavog voća zauzima značajno mesto u voćarstvu Srbije.
Tradicionalno, najviše se gaji šljiva sa sve raznovrsnijim sortimentom u poslednjih desetak
godina, dok je proizvodnja trešnje, višnje i kajsije sve više zastupljena u pojedinim regionima
zemlje, nekoliko decenija unazad. Prema podacima FAO za 2021. godinu, prinos šljive bio je
oko 40.000 t, a trešanja i višanja oko 15.000 t. Iste godine, proizvedeno je oko 30.000 t kajsije.
Uspešnu proizvodnju često ometa pojava različitih biljnih bolesti.
Od bakterioznih oboljenja, bakteriozni rak korena i korenovog različitih gajenih vrsta
zauzima značajno mesto. S obzirom da je utvđeno da bakteriozne tumore osim tumorogenih,
naseljavaju i druge vrste bakterija, deo istraživanja posvećen je izučavanju sastava populacije
mikroorganizama tumora.
Tokom 2020. i 2021. godine na području Srbije, prikupljeni su uzorci šljive, trešnje,
višnje i kajsije sa izraženim simptomima bakterioznog raka. Primenom savremene metode
sekvenciranja umnoženih produkata regiona V3-V4 16S rRNK gena, dobijene su amplikonske sekvence (ASV), koje su dalje obrađene. Na taj način, determinisane su najzastupljenije vrste
bakterija u testiranim uzorcima.
Patogena vrsta R. tumorigenes detektovana je kod trećine od ukupnog broja testiranih
uzoraka. U uzorcima u kojima je prisutna, njena relativna zastupljenost iznosi do ~ 4%.
Rhizobium spp. prisutan je do ~ 11% u uzorcima šljive, odnosno ~ 6% u uzorcima kajsije i ~
5% trešnje i višnje. Vrste roda Bacillus detektovane su u svim testiranim tumorima, sa udelom
i do ~ 53% kod uzoraka šljive. U tumorima na trešnji i višnji, prisutne su vrste roda Rachnella
u koncentraciji do ~ 23%, kao i Cutibacterium do ~ 14%. Vrste roda Pseuodmonas
detektovane su u uzrocima tumora na kajsiji (do ~4%). Osim navedenih, u uzorcima su
prisutni i drugi taksoni u nižim koncentracijama.
Predstavljeni rezultati su deo projekta koji se sprovodi u cilju boljeg razumevanja
odnosa između patogenih i nepatogenih vrsta u zajednici mikroorganizama tumora. Imajući u
vidu sve veći značaj pojave bakterioznog raka u različitim zasadima širom sveta, kao i
potencjalni benefit mikroorganizama koji naseljavaju tumore u biološkoj kontroli i opštem
stanju biljke domaćina, istraživanja na ovu temu će biti od značaja i u narednom periodu.",
publisher = "Društvo za zaštitu bilja Srbije",
journal = "XVII Simpozijum o zaštiti bilja, Zbornik rezimea radova, Zlatibor, 27-30. novembar 2023",
title = "Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji",
pages = "55-54"
}
Zlatković, N., Kuzmanović, N., Kuzmanović, S.,& Gašić, K.. (2023). Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji. in XVII Simpozijum o zaštiti bilja, Zbornik rezimea radova, Zlatibor, 27-30. novembar 2023
Društvo za zaštitu bilja Srbije., 54-55.
Zlatković N, Kuzmanović N, Kuzmanović S, Gašić K. Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji. in XVII Simpozijum o zaštiti bilja, Zbornik rezimea radova, Zlatibor, 27-30. novembar 2023. 2023;:54-55..
Zlatković, Nevena, Kuzmanović, Nemanja, Kuzmanović, Slobodan, Gašić, Katarina, "Populacija bakterija u bakterioznim tumorima koštičavog voća u Srbiji" in XVII Simpozijum o zaštiti bilja, Zbornik rezimea radova, Zlatibor, 27-30. novembar 2023 (2023):54-55.

Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov

Gašić, Katarina; Zlatković, Nevena; Kuzmanović, Nemanja

(Frontiers Media, 2022)

TY  - JOUR
AU  - Gašić, Katarina
AU  - Zlatković, Nevena
AU  - Kuzmanović, Nemanja
PY  - 2022
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/646
AB  - Serious outbreaks of walnut deep bark canker were observed on young walnut trees (Juglans regia L.) in two localities in the northern part of Serbia during 2020. From the symptomatic walnut tissues, two types of bacterial colonies were isolated, predominantly, light cream, circular and smooth colonies, as well as small, yellowish, mucoid and convex ones. PCR analysis and phenotypic assays suggested that the former group belongs to Brenneria spp., while the latter isolates were identified as Xanthomonas arboricola pv. juglandis. Within the Brenneria group, two strains were identified as Brenneria nigrifluens, while other 15 strains did not belong to any Brenneria species described so far. Therefore, we selected four representative strains of the unknown Brenneria sp. and subjected them to polyphasic analysis. As expected, in a phylogenetic tree based on partial 16S rDNA sequences, four novel strains grouped with other Brenneria representatives, and showed close phylogenetic relationship to Brenneria salicis. Furthermore, multilocus sequence analysis (MLSA) based on the partial sequences of atpD, gyrB, infB and rpoB housekeeping genes and core-genome phylogeny indicated that the studied strains form a novel and a clearly separate Brenneria lineage. Overall genome relatedness indices showed that they represent a new Brenneria species. The new species can be differentiated from the other Brenneria spp. infecting walnut and closely related B. salicis strains based on phenotypic characteristics, as well. Moreover, the pathogenicity tests on two-year-old walnut plants proved the ability of strains to cause necrosis and longitudinal black lesions and cracks on the trunk and branches of walnut trees. Overall, polyphasic characterization showed that the studied strains isolated from walnut with symptoms of deep bark canker represent a novel species of the genus Brenneria for which the name Brenneria izbisi sp. nov. is proposed. The type strain of B. izbisi is KBI 423T (= CFBP 9035T = LMG 32479T). To facilitate rapid identification of newly described species, a conventional PCR protocol and primers targeting the putative gene hrpP, were developed. Further study should reveal the potential role of each pathogen isolated from symptomatic walnut in disease development as well as possible interaction between them.
PB  - Frontiers Media
T2  - Frontiers in Plant Science
T1  - Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov
VL  - 13
DO  - 10.3389/fpls.2022.1055186
ER  - 
@article{
author = "Gašić, Katarina and Zlatković, Nevena and Kuzmanović, Nemanja",
year = "2022",
abstract = "Serious outbreaks of walnut deep bark canker were observed on young walnut trees (Juglans regia L.) in two localities in the northern part of Serbia during 2020. From the symptomatic walnut tissues, two types of bacterial colonies were isolated, predominantly, light cream, circular and smooth colonies, as well as small, yellowish, mucoid and convex ones. PCR analysis and phenotypic assays suggested that the former group belongs to Brenneria spp., while the latter isolates were identified as Xanthomonas arboricola pv. juglandis. Within the Brenneria group, two strains were identified as Brenneria nigrifluens, while other 15 strains did not belong to any Brenneria species described so far. Therefore, we selected four representative strains of the unknown Brenneria sp. and subjected them to polyphasic analysis. As expected, in a phylogenetic tree based on partial 16S rDNA sequences, four novel strains grouped with other Brenneria representatives, and showed close phylogenetic relationship to Brenneria salicis. Furthermore, multilocus sequence analysis (MLSA) based on the partial sequences of atpD, gyrB, infB and rpoB housekeeping genes and core-genome phylogeny indicated that the studied strains form a novel and a clearly separate Brenneria lineage. Overall genome relatedness indices showed that they represent a new Brenneria species. The new species can be differentiated from the other Brenneria spp. infecting walnut and closely related B. salicis strains based on phenotypic characteristics, as well. Moreover, the pathogenicity tests on two-year-old walnut plants proved the ability of strains to cause necrosis and longitudinal black lesions and cracks on the trunk and branches of walnut trees. Overall, polyphasic characterization showed that the studied strains isolated from walnut with symptoms of deep bark canker represent a novel species of the genus Brenneria for which the name Brenneria izbisi sp. nov. is proposed. The type strain of B. izbisi is KBI 423T (= CFBP 9035T = LMG 32479T). To facilitate rapid identification of newly described species, a conventional PCR protocol and primers targeting the putative gene hrpP, were developed. Further study should reveal the potential role of each pathogen isolated from symptomatic walnut in disease development as well as possible interaction between them.",
publisher = "Frontiers Media",
journal = "Frontiers in Plant Science",
title = "Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov",
volume = "13",
doi = "10.3389/fpls.2022.1055186"
}
Gašić, K., Zlatković, N.,& Kuzmanović, N.. (2022). Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov. in Frontiers in Plant Science
Frontiers Media., 13.
https://doi.org/10.3389/fpls.2022.1055186
Gašić K, Zlatković N, Kuzmanović N. Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov. in Frontiers in Plant Science. 2022;13.
doi:10.3389/fpls.2022.1055186 .
Gašić, Katarina, Zlatković, Nevena, Kuzmanović, Nemanja, "Polyphasic study of phytopathogenic bacterial strains associated with deep bark canker of walnut in Serbia revealed a new species, Brenneria izbisi sp. nov" in Frontiers in Plant Science, 13 (2022),
https://doi.org/10.3389/fpls.2022.1055186 . .
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First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia

Zlatković, Nevena; Prokić, Anđelka; Gašić, Katarina; Kuzmanović, Nemanja; Ivanović, Milan; Obradović, Aleksa

(American Phytopathological Society, 2019)

TY  - JOUR
AU  - Zlatković, Nevena
AU  - Prokić, Anđelka
AU  - Gašić, Katarina
AU  - Kuzmanović, Nemanja
AU  - Ivanović, Milan
AU  - Obradović, Aleksa
PY  - 2019
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1143
AB  - Watermelon (Citrullus lanatus) and squash (Cucurbita pepo) are traditionally grown in northern Serbia, in the province of Vojvodina. Most of the cucurbit cultivars grown in Serbia originate from imported seed. In July 2013, round, water-soaked lesions were observed on the fruits on sporadic squash plants grown in two fields of the breeder variety trials in Bački Petrovac. Affected tissue was light brown, slightly sunken, soft, and macerated. From symptomatic plants (cultivar GL Maxima), showing 30% symptom intensity, a uniform population of bacterial colonies was isolated, and one strain was chosen for the collection. In August of the following season, infection of the vine was observed on watermelon plants (cultivar unknown) grown in a commercial field in Čelarevo. Soft rot brownish lesions developed on infected stems, resulting in collapse and wilting of entire vines. The number of plants affected with symptoms was less than 10%. From the colonies isolated from the diseased tissue, two bacterial strains were purified and stored in the collection. Being pectolytic and isolated from cucurbits, the squash strain and two watermelon strains were subjected to further characterization. The strains developed white-gray, nonmucoid, round colonies with irregular margins on nutrient agar medium. They were gram and oxidase negative, tobacco HR and catalase positive, facultative anaerobes, nonfluorescent, caused soft rot on potato tuber slices, grew at 37°C, and reduced nitrate. They neither utilized arginine nor produced acid from sorbitol and inositol, showing characteristics of Pectobacterium species (De Boer and Kelman 2001). The PCR assay was carried out using primers BR1f/L1r (Duarte et al. 2004), specific for Pectobacterium carotovorum subsp. brasiliense (Pcb). A specific fragment of 322 bp was amplified for all three strains tested. The 16S rDNA sequence analysis (GenBank nos. MH031784, MH031785, and MH031786) showed 99% identity to the sequences of Pcb isolated from cucumber (CP020350), pepper (KX377597), and cabbage (KY021040) in China and potato in Japan (LC146476). The recA (MK911735, MK911736, and MK911737) and gapA (MK911738, MK911739, and MK911740) sequence analysis of three strains showed the highest nucleotide identity (100 to 98.35% and 99.42 to 98.08%, respectively) with Pcb previously deposited in NCBI GenBank database. Pathogenicity of the strains was tested on 2-week-old watermelon (cv. Rosa) and melon (cv. Sezam) seedlings, grown in a commercial potting mix in a greenhouse, as well as on mature zucchini fruits. Three seedlings per strain were inoculated by spraying with bacterial suspension (approx. 1 × 108 CFU/ml) using a handheld sprayer. Inoculated plants were incubated under plastic bags for 24 h and afterward maintained in a greenhouse at 28 ± 2°C. Two days after inoculation, water-soaked lesions developed on cotyledons of the watermelon and melon plants. No symptoms were observed on control plants sprayed with water. Three zucchini fruits were inoculated by pricking with a syringe and hypodermic needle and leaving a droplet of bacterial suspension (approx. 1 × 107 CFU/ml) at the point of inoculation. Inoculated fruits were placed on wet filter paper in a sealed plastic container at 28 ± 2°C. Treatment with sterile distilled water was used as a negative control. Discoloration of the tissue and soft rot spreading from the inoculation point developed within 48 h from inoculation. No symptoms developed on the control fruits. To complete Koch’s postulates, bacteria were reisolated from the inoculated plant and fruit tissue and were identified as Pcb by PCR assay (Duarte et al. 2004). This is the first report of Pcb causing soft rot of squash and watermelon in Serbia. The origin of the pathogen remained unknown. It might have been present in Serbia for some time but misidentified in previous studies that could not discriminate this subspecies or recently introduced by infected seed.
PB  - American Phytopathological Society
T2  - Plant Disease
T1  - First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia
IS  - 10
SP  - 2667
VL  - 103
DO  - 10.1094/PDIS-12-18-2213-PDN
ER  - 
@article{
author = "Zlatković, Nevena and Prokić, Anđelka and Gašić, Katarina and Kuzmanović, Nemanja and Ivanović, Milan and Obradović, Aleksa",
year = "2019",
abstract = "Watermelon (Citrullus lanatus) and squash (Cucurbita pepo) are traditionally grown in northern Serbia, in the province of Vojvodina. Most of the cucurbit cultivars grown in Serbia originate from imported seed. In July 2013, round, water-soaked lesions were observed on the fruits on sporadic squash plants grown in two fields of the breeder variety trials in Bački Petrovac. Affected tissue was light brown, slightly sunken, soft, and macerated. From symptomatic plants (cultivar GL Maxima), showing 30% symptom intensity, a uniform population of bacterial colonies was isolated, and one strain was chosen for the collection. In August of the following season, infection of the vine was observed on watermelon plants (cultivar unknown) grown in a commercial field in Čelarevo. Soft rot brownish lesions developed on infected stems, resulting in collapse and wilting of entire vines. The number of plants affected with symptoms was less than 10%. From the colonies isolated from the diseased tissue, two bacterial strains were purified and stored in the collection. Being pectolytic and isolated from cucurbits, the squash strain and two watermelon strains were subjected to further characterization. The strains developed white-gray, nonmucoid, round colonies with irregular margins on nutrient agar medium. They were gram and oxidase negative, tobacco HR and catalase positive, facultative anaerobes, nonfluorescent, caused soft rot on potato tuber slices, grew at 37°C, and reduced nitrate. They neither utilized arginine nor produced acid from sorbitol and inositol, showing characteristics of Pectobacterium species (De Boer and Kelman 2001). The PCR assay was carried out using primers BR1f/L1r (Duarte et al. 2004), specific for Pectobacterium carotovorum subsp. brasiliense (Pcb). A specific fragment of 322 bp was amplified for all three strains tested. The 16S rDNA sequence analysis (GenBank nos. MH031784, MH031785, and MH031786) showed 99% identity to the sequences of Pcb isolated from cucumber (CP020350), pepper (KX377597), and cabbage (KY021040) in China and potato in Japan (LC146476). The recA (MK911735, MK911736, and MK911737) and gapA (MK911738, MK911739, and MK911740) sequence analysis of three strains showed the highest nucleotide identity (100 to 98.35% and 99.42 to 98.08%, respectively) with Pcb previously deposited in NCBI GenBank database. Pathogenicity of the strains was tested on 2-week-old watermelon (cv. Rosa) and melon (cv. Sezam) seedlings, grown in a commercial potting mix in a greenhouse, as well as on mature zucchini fruits. Three seedlings per strain were inoculated by spraying with bacterial suspension (approx. 1 × 108 CFU/ml) using a handheld sprayer. Inoculated plants were incubated under plastic bags for 24 h and afterward maintained in a greenhouse at 28 ± 2°C. Two days after inoculation, water-soaked lesions developed on cotyledons of the watermelon and melon plants. No symptoms were observed on control plants sprayed with water. Three zucchini fruits were inoculated by pricking with a syringe and hypodermic needle and leaving a droplet of bacterial suspension (approx. 1 × 107 CFU/ml) at the point of inoculation. Inoculated fruits were placed on wet filter paper in a sealed plastic container at 28 ± 2°C. Treatment with sterile distilled water was used as a negative control. Discoloration of the tissue and soft rot spreading from the inoculation point developed within 48 h from inoculation. No symptoms developed on the control fruits. To complete Koch’s postulates, bacteria were reisolated from the inoculated plant and fruit tissue and were identified as Pcb by PCR assay (Duarte et al. 2004). This is the first report of Pcb causing soft rot of squash and watermelon in Serbia. The origin of the pathogen remained unknown. It might have been present in Serbia for some time but misidentified in previous studies that could not discriminate this subspecies or recently introduced by infected seed.",
publisher = "American Phytopathological Society",
journal = "Plant Disease",
title = "First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia",
number = "10",
pages = "2667",
volume = "103",
doi = "10.1094/PDIS-12-18-2213-PDN"
}
Zlatković, N., Prokić, A., Gašić, K., Kuzmanović, N., Ivanović, M.,& Obradović, A.. (2019). First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia. in Plant Disease
American Phytopathological Society., 103(10), 2667.
https://doi.org/10.1094/PDIS-12-18-2213-PDN
Zlatković N, Prokić A, Gašić K, Kuzmanović N, Ivanović M, Obradović A. First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia. in Plant Disease. 2019;103(10):2667.
doi:10.1094/PDIS-12-18-2213-PDN .
Zlatković, Nevena, Prokić, Anđelka, Gašić, Katarina, Kuzmanović, Nemanja, Ivanović, Milan, Obradović, Aleksa, "First Report of Pectobacterium carotovorum subsp. brasiliense Causing Soft Rot on Squash and Watermelon in Serbia" in Plant Disease, 103, no. 10 (2019):2667,
https://doi.org/10.1094/PDIS-12-18-2213-PDN . .
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Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall

Kuzmanović, Nemanja; Biondi, E.; Ivanović, Milan; Prokić, Anđelka; Zlatković, Nevena; Bertaccini, Assunta; Obradović, Aleksa

(Springer, 2016)

TY  - JOUR
AU  - Kuzmanović, Nemanja
AU  - Biondi, E.
AU  - Ivanović, Milan
AU  - Prokić, Anđelka
AU  - Zlatković, Nevena
AU  - Bertaccini, Assunta
AU  - Obradović, Aleksa
PY  - 2016
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/862
AB  - Rhizobium rhizogenes, may seriously impact production in nurseries and vineyards worldwide. Although rapid and efficient detection and identification of tumorigenic bacteria is facilitated by PCR-based methods, high genetic diversity of these pathogens may hinder use of these methods in the disease diagnosis. Therefore, reliability of 11 primer pairs targeting fragments located on Ti plasmid or chromosomal DNA was tested on extensive collection of All. vitis, A. tumefaciens complex and R. rhizogenes strains isolated from grapevine throughout the world. Only primers VCF3/VCR3 targeting virC gene located on Ti plasmid clearly and accurately identified all tested tumorigenic strains associated with grapevine crown gall. Moreover, this primer pair coupled with primers specific for chromosomal pehA gene (PGF/PGR) in duplex PCR, may be recommended as the method of choice for routine preliminary identification of tumorigenic strains and differentiation of All.
PB  - Springer
T2  - Journal of Plant Pathology
T1  - Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall
EP  - 319
IS  - 2
SP  - 311
VL  - 98
DO  - 10.4454/JPP.V98I2.028
ER  - 
@article{
author = "Kuzmanović, Nemanja and Biondi, E. and Ivanović, Milan and Prokić, Anđelka and Zlatković, Nevena and Bertaccini, Assunta and Obradović, Aleksa",
year = "2016",
abstract = "Rhizobium rhizogenes, may seriously impact production in nurseries and vineyards worldwide. Although rapid and efficient detection and identification of tumorigenic bacteria is facilitated by PCR-based methods, high genetic diversity of these pathogens may hinder use of these methods in the disease diagnosis. Therefore, reliability of 11 primer pairs targeting fragments located on Ti plasmid or chromosomal DNA was tested on extensive collection of All. vitis, A. tumefaciens complex and R. rhizogenes strains isolated from grapevine throughout the world. Only primers VCF3/VCR3 targeting virC gene located on Ti plasmid clearly and accurately identified all tested tumorigenic strains associated with grapevine crown gall. Moreover, this primer pair coupled with primers specific for chromosomal pehA gene (PGF/PGR) in duplex PCR, may be recommended as the method of choice for routine preliminary identification of tumorigenic strains and differentiation of All.",
publisher = "Springer",
journal = "Journal of Plant Pathology",
title = "Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall",
pages = "319-311",
number = "2",
volume = "98",
doi = "10.4454/JPP.V98I2.028"
}
Kuzmanović, N., Biondi, E., Ivanović, M., Prokić, A., Zlatković, N., Bertaccini, A.,& Obradović, A.. (2016). Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall. in Journal of Plant Pathology
Springer., 98(2), 311-319.
https://doi.org/10.4454/JPP.V98I2.028
Kuzmanović N, Biondi E, Ivanović M, Prokić A, Zlatković N, Bertaccini A, Obradović A. Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall. in Journal of Plant Pathology. 2016;98(2):311-319.
doi:10.4454/JPP.V98I2.028 .
Kuzmanović, Nemanja, Biondi, E., Ivanović, Milan, Prokić, Anđelka, Zlatković, Nevena, Bertaccini, Assunta, Obradović, Aleksa, "Evaluation of different pcr primers for identification of tumorigenic bacteria associated with grapevine crown gall" in Journal of Plant Pathology, 98, no. 2 (2016):311-319,
https://doi.org/10.4454/JPP.V98I2.028 . .
2
2

Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential

Gašić, Katarina; Ivanović, Milan; Kuzmanović, Nemanja; Prokić, Anđelka; Obradović, Aleksa; Šević, Milan

(International Society for Horticultural Science, 2014)

TY  - JOUR
AU  - Gašić, Katarina
AU  - Ivanović, Milan
AU  - Kuzmanović, Nemanja
AU  - Prokić, Anđelka
AU  - Obradović, Aleksa
AU  - Šević, Milan
PY  - 2014
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1075
AB  - In search for an alternative to chemical control of fire blight, we isolated seven bacteriophages specific to E. amylovora. Three phages were isolated from water, three from symptomless pear leaves and one from apple leaves with characteristic fire blight symptoms. Host-range studies showed that the phages differed in the ability to lyse 40 strains of E. amylovora isolated in Serbia. Based on its lytic activity, phage Phi Ea2 was chosen for further study of biological control potential in pear and apple blossom bioassays. A phage suspension of 10(8) PFU/ml was applied on blossoms either 2 h before, 2 h after or at the same time of inoculation. In three fully replicated bioassay experiments, application of host-specific phages 2 h before inoculation and at the time of inoculation significantly reduced fire blight symptom development compared to untreated control. However, disease reduction was not significant when phages were applied 2 h after inoculation.
PB  - International Society for Horticultural Science
T2  - Acta Horticulturae
T1  - Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential
EP  - 126
SP  - 123
VL  - 1056
DO  - 10.17660/ActaHortic.2014.1056.17
ER  - 
@article{
author = "Gašić, Katarina and Ivanović, Milan and Kuzmanović, Nemanja and Prokić, Anđelka and Obradović, Aleksa and Šević, Milan",
year = "2014",
abstract = "In search for an alternative to chemical control of fire blight, we isolated seven bacteriophages specific to E. amylovora. Three phages were isolated from water, three from symptomless pear leaves and one from apple leaves with characteristic fire blight symptoms. Host-range studies showed that the phages differed in the ability to lyse 40 strains of E. amylovora isolated in Serbia. Based on its lytic activity, phage Phi Ea2 was chosen for further study of biological control potential in pear and apple blossom bioassays. A phage suspension of 10(8) PFU/ml was applied on blossoms either 2 h before, 2 h after or at the same time of inoculation. In three fully replicated bioassay experiments, application of host-specific phages 2 h before inoculation and at the time of inoculation significantly reduced fire blight symptom development compared to untreated control. However, disease reduction was not significant when phages were applied 2 h after inoculation.",
publisher = "International Society for Horticultural Science",
journal = "Acta Horticulturae",
title = "Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential",
pages = "126-123",
volume = "1056",
doi = "10.17660/ActaHortic.2014.1056.17"
}
Gašić, K., Ivanović, M., Kuzmanović, N., Prokić, A., Obradović, A.,& Šević, M.. (2014). Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential. in Acta Horticulturae
International Society for Horticultural Science., 1056, 123-126.
https://doi.org/10.17660/ActaHortic.2014.1056.17
Gašić K, Ivanović M, Kuzmanović N, Prokić A, Obradović A, Šević M. Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential. in Acta Horticulturae. 2014;1056:123-126.
doi:10.17660/ActaHortic.2014.1056.17 .
Gašić, Katarina, Ivanović, Milan, Kuzmanović, Nemanja, Prokić, Anđelka, Obradović, Aleksa, Šević, Milan, "Bacteriophage of Erwinia amylovora - Host Range and Fire Blight Control Potential" in Acta Horticulturae, 1056 (2014):123-126,
https://doi.org/10.17660/ActaHortic.2014.1056.17 . .
2

First Report of Agrobacterium vitis as the Causal Agent of Grapevine Crown Gall in Serbia

Kuzmanović, Nemanja; Ćalić, Anđelka; Ivanović, Milan; Gašić, Katarina; Pulawska, Joanna; Obradović, Aleksa

(American Phytopathological Society, 2012)


                                            

                                            
Kuzmanović, N., Ćalić, A., Ivanović, M., Gašić, K., Pulawska, J.,& Obradović, A.. (2012). First Report of Agrobacterium vitis as the Causal Agent of Grapevine Crown Gall in Serbia. in Plant Disease
American Phytopathological Society., 96(2), 286.
https://doi.org/10.1094/PDIS-07-11-0600
Kuzmanović N, Ćalić A, Ivanović M, Gašić K, Pulawska J, Obradović A. First Report of Agrobacterium vitis as the Causal Agent of Grapevine Crown Gall in Serbia. in Plant Disease. 2012;96(2):286.
doi:10.1094/PDIS-07-11-0600 .
Kuzmanović, Nemanja, Ćalić, Anđelka, Ivanović, Milan, Gašić, Katarina, Pulawska, Joanna, Obradović, Aleksa, "First Report of Agrobacterium vitis as the Causal Agent of Grapevine Crown Gall in Serbia" in Plant Disease, 96, no. 2 (2012):286,
https://doi.org/10.1094/PDIS-07-11-0600 . .
2
1

Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore

Ivanović, Milan; Gašić, Katarina; Čalić, Anđelka; Kuzmanović, Nemanja; Ivanović, Mirko; Obradović, Aleksa

(Institute of Pesticides and Environmental Protection, Belgrade & Plant Protection Society of Serbia, Belgrade, 2011)

TY  - JOUR
AU  - Ivanović, Milan
AU  - Gašić, Katarina
AU  - Čalić, Anđelka
AU  - Kuzmanović, Nemanja
AU  - Ivanović, Mirko
AU  - Obradović, Aleksa
PY  - 2011
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/904
AB  - Automatizovana metoda analize masnih kiselina primenjena je za identifikaciju i proučavanje heterogenosti Erwinia amylovora. Kao materijal za analizu prikupljen je 41 soj E. amylovora izolovan iz 8 različitih vrsta domaćina gajenih u 13 lokaliteta u Srbiji i jednom lokalitetu u Crnoj Gori. Rezultati ukazuju da svi proučavani sojevi poseduju 14:0 3OH masnu kiselinu, koja je karakteristična za „amylovora“ grupu. Na osnovu sastava masnih kiselina 39 sojeva je identifikovano kao E. amylovora, kao prvi izbor iz baze podataka. Dva soja su identifikovana kao E. amylovora, ali tek kao drugi izbor iz baze podataka, što je najverovatnije posledica specifičnosti u sastavu njihovih masnih kiselina. Rezultati analize masnih kiselina takođe pokazuju da populacija E. amylovora poreklom iz Srbije nije homogena i da među sojevima postoje tri grupe ili profila, koji su u ovom radu obeleženi sa α, β i γ. Svi sojevi koji su izolovani na prostoru centralne ili južne Srbije pripadaju grupi α, kao i četiri soja izolovana na području Vojvodine. Grupama β i γ pripadaju samo sojevi izolovani na području Vojvodine. Dobijeni rezultati predstavljaju dokaz heterogenosti populacije E. amylovora na ovim prostorima i ukazuju na mogućnost prodora patogena u naše područje iz različitih pravaca. Analiza masnih kiselina omogućila je ne samo identifikaciju do nivoa vrste, već i nova saznanja o heterogenosti populacije E. amylovora na ovim prostorima.
PB  - Institute of Pesticides and Environmental Protection, Belgrade & Plant Protection Society of Serbia, Belgrade
T2  - Pesticidi i fitomedicina
T1  - Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore
EP  - 69
IS  - 1
SP  - 61
VL  - 26
DO  - DOI: 10.2298/PIF1101061I
ER  - 
@article{
author = "Ivanović, Milan and Gašić, Katarina and Čalić, Anđelka and Kuzmanović, Nemanja and Ivanović, Mirko and Obradović, Aleksa",
year = "2011",
abstract = "Automatizovana metoda analize masnih kiselina primenjena je za identifikaciju i proučavanje heterogenosti Erwinia amylovora. Kao materijal za analizu prikupljen je 41 soj E. amylovora izolovan iz 8 različitih vrsta domaćina gajenih u 13 lokaliteta u Srbiji i jednom lokalitetu u Crnoj Gori. Rezultati ukazuju da svi proučavani sojevi poseduju 14:0 3OH masnu kiselinu, koja je karakteristična za „amylovora“ grupu. Na osnovu sastava masnih kiselina 39 sojeva je identifikovano kao E. amylovora, kao prvi izbor iz baze podataka. Dva soja su identifikovana kao E. amylovora, ali tek kao drugi izbor iz baze podataka, što je najverovatnije posledica specifičnosti u sastavu njihovih masnih kiselina. Rezultati analize masnih kiselina takođe pokazuju da populacija E. amylovora poreklom iz Srbije nije homogena i da među sojevima postoje tri grupe ili profila, koji su u ovom radu obeleženi sa α, β i γ. Svi sojevi koji su izolovani na prostoru centralne ili južne Srbije pripadaju grupi α, kao i četiri soja izolovana na području Vojvodine. Grupama β i γ pripadaju samo sojevi izolovani na području Vojvodine. Dobijeni rezultati predstavljaju dokaz heterogenosti populacije E. amylovora na ovim prostorima i ukazuju na mogućnost prodora patogena u naše područje iz različitih pravaca. Analiza masnih kiselina omogućila je ne samo identifikaciju do nivoa vrste, već i nova saznanja o heterogenosti populacije E. amylovora na ovim prostorima.",
publisher = "Institute of Pesticides and Environmental Protection, Belgrade & Plant Protection Society of Serbia, Belgrade",
journal = "Pesticidi i fitomedicina",
title = "Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore",
pages = "69-61",
number = "1",
volume = "26",
doi = "DOI: 10.2298/PIF1101061I"
}
Ivanović, M., Gašić, K., Čalić, A., Kuzmanović, N., Ivanović, M.,& Obradović, A.. (2011). Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore. in Pesticidi i fitomedicina
Institute of Pesticides and Environmental Protection, Belgrade & Plant Protection Society of Serbia, Belgrade., 26(1), 61-69.
https://doi.org/DOI: 10.2298/PIF1101061I
Ivanović M, Gašić K, Čalić A, Kuzmanović N, Ivanović M, Obradović A. Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore. in Pesticidi i fitomedicina. 2011;26(1):61-69.
doi:DOI: 10.2298/PIF1101061I .
Ivanović, Milan, Gašić, Katarina, Čalić, Anđelka, Kuzmanović, Nemanja, Ivanović, Mirko, Obradović, Aleksa, "Analiza masnih kiselina sojeva Erwinia amylovora iz Srbije i Crne Gore" in Pesticidi i fitomedicina, 26, no. 1 (2011):61-69,
https://doi.org/DOI: 10.2298/PIF1101061I . .

Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum

Kuzmanović, Nemanja; Pulawska, Joanna; Prokić, Anđelka; Ivanović, Milan; Zlatković, Nevena; Jeffrey, Jones; Obradović, Aleksa

(Elsevier, 201)

TY  - JOUR
AU  - Kuzmanović, Nemanja
AU  - Pulawska, Joanna
AU  - Prokić, Anđelka
AU  - Ivanović, Milan
AU  - Zlatković, Nevena
AU  - Jeffrey, Jones
AU  - Obradović, Aleksa
PY  - 201
UR  - https://enauka.gov.rs/handle/123456789/149425
UR  - http://aspace.agrif.bg.ac.rs/handle/123456789/3716
UR  - https://plantarum.izbis.bg.ac.rs/handle/123456789/1187
AB  - Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values (<92%) between the whole genome sequences of strain KFB 330T and related Agrobacterium species. The major cellular fatty acids of the novel strains were 18:1 w7c (72.8–77.87%) and 16:0 (6.82–8.58%). Phenotypic features allowed their differentiation from closely related species. Polyphasic characterization showed that the three strains represent a novel species of the genus Agrobacterium, for which the name Agrobacterium arsenijevicii sp. nov. is proposed. The type strain of A. arsenijevicii is KFB 330T (=CFBP 8308T = LMG 28674T).
PB  - Elsevier
T2  - Systematic and Applied Microbiology
T1  - Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum
EP  - 378
IS  - 6
SP  - 373
VL  - 38
DO  - 10.1016/j.syapm.2015.06.001
ER  - 
@article{
author = "Kuzmanović, Nemanja and Pulawska, Joanna and Prokić, Anđelka and Ivanović, Milan and Zlatković, Nevena and Jeffrey, Jones and Obradović, Aleksa",
year = "201",
abstract = "Two plant-tumorigenic strains KFB 330T and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, “A. fabrum” and A. pusense. This was further supported by average nucleotide identity values (<92%) between the whole genome sequences of strain KFB 330T and related Agrobacterium species. The major cellular fatty acids of the novel strains were 18:1 w7c (72.8–77.87%) and 16:0 (6.82–8.58%). Phenotypic features allowed their differentiation from closely related species. Polyphasic characterization showed that the three strains represent a novel species of the genus Agrobacterium, for which the name Agrobacterium arsenijevicii sp. nov. is proposed. The type strain of A. arsenijevicii is KFB 330T (=CFBP 8308T = LMG 28674T).",
publisher = "Elsevier",
journal = "Systematic and Applied Microbiology",
title = "Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum",
pages = "378-373",
number = "6",
volume = "38",
doi = "10.1016/j.syapm.2015.06.001"
}
Kuzmanović, N., Pulawska, J., Prokić, A., Ivanović, M., Zlatković, N., Jeffrey, J.,& Obradović, A.. (201). Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum. in Systematic and Applied Microbiology
Elsevier., 38(6), 373-378.
https://doi.org/10.1016/j.syapm.2015.06.001
Kuzmanović N, Pulawska J, Prokić A, Ivanović M, Zlatković N, Jeffrey J, Obradović A. Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum. in Systematic and Applied Microbiology. 201;38(6):373-378.
doi:10.1016/j.syapm.2015.06.001 .
Kuzmanović, Nemanja, Pulawska, Joanna, Prokić, Anđelka, Ivanović, Milan, Zlatković, Nevena, Jeffrey, Jones, Obradović, Aleksa, "Agrobacterium arsernijevicii sp nov., isolated from crown gall tumors on raspberry and cherry plum" in Systematic and Applied Microbiology, 38, no. 6 (201):373-378,
https://doi.org/10.1016/j.syapm.2015.06.001 . .
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